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有group信息:
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有group信息:
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``` @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle="",colorAttr='group1')```
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```
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@scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle="",colorAttr='group1')
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```
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无group信息:
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无group信息:
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``` @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle='')```
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```
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@scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle='')
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```
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### choppy report
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### choppy report
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```@heatmap-d3(dataFile='/yourdir/data/rnaseq_cor.rds', dataType='rds', labCol='TRUE')```
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```
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@heatmap-d3(dataFile='/yourdir/data/rnaseq_cor.rds', dataType='rds', labCol='TRUE')
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```
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1. 火山图
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1. 火山图
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```@scatter-plot(dataFile='/yourdir/data/rnaseq_AvsB_degs.rds', dataType='rds', xAxis='logfc', xTitle='log2FC',yAxis='log10p',yTitle='-log10 (p)', colorAttr='sigene')```
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```
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@scatter-plot(dataFile='/yourdir/data/rnaseq_AvsB_degs.rds', dataType='rds', xAxis='logfc', xTitle='log2FC',yAxis='log10p',yTitle='-log10 (p)', colorAttr='sigene')
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```
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2. 差异基因清单表
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2. 差异基因清单表
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```@data-table-js(dataUrl='/yourdir/data/rnaseq_degs_acrossgroups.csv')```
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```
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@data-table-js(dataUrl='/yourdir/data/rnaseq_degs_acrossgroups.csv')
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```
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3. 整体差异基因数量
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3. 整体差异基因数量
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``` @stack-barplot-r(dataFile='/yourdir/data/rnaseq_degs_stats.rds', dataType='rds', xAxis='versus', yAxis='number',labelAttr='type',barPos='stack') ```
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```
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@stack-barplot-r(dataFile='/yourdir/data/rnaseq_degs_stats.rds', dataType='rds', xAxis='versus', yAxis='number',labelAttr='type',barPos='stack')
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```
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### choppy report
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### choppy report
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``` @data-table-js(dataUrl='/yourdir/data/rnaseq_GOenrich.csv')```
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```@data-table-js(dataUrl='/yourdir/data/rnaseq_KEGGenrich.csv')```
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```
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@data-table-js(dataUrl='/yourdir/data/rnaseq_GOenrich.csv')
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@data-table-js(dataUrl='/yourdir/data/rnaseq_KEGGenrich.csv')
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```
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