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yingyu 6 years ago
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有group信息: 有group信息:
``` @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle="",colorAttr='group1')```
```
@scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle="",colorAttr='group1')
```
无group信息: 无group信息:
``` @scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle='')```
```
@scatter-plot(dataFile='/yourdir/data/rnaseq_pca.rds', dataType='rds', xAxis='PC1', xTitle='',yAxis='PC2',yTitle='')
```
### choppy report ### choppy report
```@heatmap-d3(dataFile='/yourdir/data/rnaseq_cor.rds', dataType='rds', labCol='TRUE')```
```
@heatmap-d3(dataFile='/yourdir/data/rnaseq_cor.rds', dataType='rds', labCol='TRUE')
```
1. 火山图 1. 火山图
```@scatter-plot(dataFile='/yourdir/data/rnaseq_AvsB_degs.rds', dataType='rds', xAxis='logfc', xTitle='log2FC',yAxis='log10p',yTitle='-log10 (p)', colorAttr='sigene')```
```
@scatter-plot(dataFile='/yourdir/data/rnaseq_AvsB_degs.rds', dataType='rds', xAxis='logfc', xTitle='log2FC',yAxis='log10p',yTitle='-log10 (p)', colorAttr='sigene')
```
2. 差异基因清单表 2. 差异基因清单表
```@data-table-js(dataUrl='/yourdir/data/rnaseq_degs_acrossgroups.csv')```
```
@data-table-js(dataUrl='/yourdir/data/rnaseq_degs_acrossgroups.csv')
```
3. 整体差异基因数量 3. 整体差异基因数量
``` @stack-barplot-r(dataFile='/yourdir/data/rnaseq_degs_stats.rds', dataType='rds', xAxis='versus', yAxis='number',labelAttr='type',barPos='stack') ```
```
@stack-barplot-r(dataFile='/yourdir/data/rnaseq_degs_stats.rds', dataType='rds', xAxis='versus', yAxis='number',labelAttr='type',barPos='stack')
```
### choppy report ### choppy report
``` @data-table-js(dataUrl='/yourdir/data/rnaseq_GOenrich.csv')```
```@data-table-js(dataUrl='/yourdir/data/rnaseq_KEGGenrich.csv')```
```
@data-table-js(dataUrl='/yourdir/data/rnaseq_GOenrich.csv')
@data-table-js(dataUrl='/yourdir/data/rnaseq_KEGGenrich.csv')
```

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