1 changed files with 4 additions and 3 deletions
+ 4
- 3
tasks/mergefq.wdl
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| @@ -9,10 +9,11 @@ task mergefq { | |||
| command <<< | |||
| set -euo pipefail | |||
| if [ ${fq3} != "" ]; then | |||
| cat ${fq1} ${fq2} > ${fq_m} | |||
| if [ ${fq3} = "" ] | |||
| then | |||
| cat ${fq1} ${fq2} > ${fq_m} | |||
| else | |||
| cat ${fq1} ${fq2} ${fq3} > ${fq_m} | |||
| cat ${fq1} ${fq2} ${fq3} > ${fq_m} | |||
| fi | |||
| >>> | |||
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