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| > Author: Yueqiang Song | > Author: Yueqiang Song | ||||
| > Email: songyq_hello@163.com | > Email: songyq_hello@163.com | ||||
| > Last Updates: 25/12/2020 | |||||
| > Last Updates: 15/12/2020 | |||||
| #### Requirements | #### Requirements | ||||
| - Ali-Cloud | - Ali-Cloud | ||||
| ``` | ``` | ||||
| # 激活choppy环境 | |||||
| $ source activate choppy-pipe-0.3.8.dev0 | $ source activate choppy-pipe-0.3.8.dev0 | ||||
| # 安装 mergefq | |||||
| $ choppy install songyueqiang/mergefq | $ choppy install songyueqiang/mergefq | ||||
| # 如果已安装，可加参数 -f | |||||
| # 如果已安装，可加参数 -f强制安装 | |||||
| $ choppy install songyueqiang/mergefq -f | $ choppy install songyueqiang/mergefq -f | ||||
| # 查看已安装的app | |||||
| $ choppy apps | $ choppy apps | ||||
| ``` | ``` | ||||
| #### quick start | #### quick start | ||||
| ``` | ``` | ||||
| # 准备sample.csv | |||||
| $ choppy samples songyueqiang/mergefq-latest > samples.csv | |||||
| # 运行命令 | # 运行命令 | ||||
| $ choppy batch songyueqiang/mergefq-latest sample.csv --project-name Your_project_name | $ choppy batch songyueqiang/mergefq-latest sample.csv --project-name Your_project_name | ||||
| # 查询运行情况 | # 查询运行情况 | ||||
| ``` | ``` | ||||
| #### 参数 | |||||
| - fq1,需要merge的第一个fastq文件 | |||||
| - fq2,需要merge的第二个fastq文件 | |||||
| - fq3,可选参数, 需要merge的第三个fastq文件,如果没有, 在sample.csv中则为空.这里设置, 最多合并3个fastq文件 | |||||
| - fq_m, merge之后的fastq文件 | |||||
| - sample_id, sample id | |||||
| - disk_size,数据盘大小，单位是GB | |||||
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