Add TNseq output

tasks/TNseq.wdl

@@ -81,6 +81,8 @@ task TNseq {
   output {
     File TNseq_vcf = "${sample}.TNseq.TN.vcf"
     File TNseq_vcf_index = "${sample}.TNseq.TN.vcf.idx"
+    File TNseq_tmp_vcf = "${sample}.TNseq.TN.tmp.vcf"
+    File TNseq_tmp_vcf_index = "${sample}.TNseq.TN.tmp.vcf.idx"
     File contamination = "${sample}.contamination"
     File contamination_segments = "${sample}.contamination.segments"
     File orientation = "${sample}.orientation"