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@@ -82,10 +82,10 @@ task TNseq { |
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} |
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output { |
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File TNseq_filter_vcf = "${sample}.TNseq.${typ}.filter.vcf" |
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File TNseq_filter_vcf_index = "${sample}.TNseq.${typ}.filter.vcf.idx" |
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File TNseq_vcf = "${sample}.TNseq.${typ}.vcf" |
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File TNseq_vcf_index = "${sample}.TNseq.${typ}.vcf.idx" |
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File TNseq_filter_vcf=${sample}.TNseq.$typ.filter.vcf |
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File TNseq_filter_vcf_index = "${sample}.TNseq.$typ.filter.vcf.idx" |
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File TNseq_vcf = "${sample}.TNseq.$typ.vcf" |
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File TNseq_vcf_index = "${sample}.TNseq.$typ.vcf.idx" |
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File contamination = "${sample}.contamination" |
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File contamination_segments = "${sample}.contamination.segments" |
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File orientation = "${sample}.orientation" |