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Update: README

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YaqingLiu 4 년 전
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@@ -13,9 +13,7 @@ The datatype is judged by whether the bed file is set (i.e. the `regions` in inp

**Supported variant callers and annotation tools**

* Variant calling:
- `haplotyper` (germline)
- `tnseq`, `tnscope`, `varscan` (somatic)
* Variant calling: `haplotyper` (germline); `tnseq`, `tnscope`, `varscan` (somatic).
* Annotation: `annovar`, `vep`.
* The above tools are <u>**not activated by default**</u>, which means the default setting is `false`. You need to manually set the caller to `true` in the submitted sample.csv.

@@ -57,4 +55,4 @@ The parameters that must need contains: sample_id,normal_fastq_1,normal_fastq_2,
* the caller you want to use.
* PoN VCFs for TNseq and TNscope is supported, but are need to be generated in advance.
* interval padding is default 0, and you can change it.
* the annotation tool is ANNOVAR or VEP.
* usually only one annotation tool is sufficient.

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