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tasks/replaceRG.wdl
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| command <<< | command <<< | ||||
| samtools addreplacerg -r "@RG\tID:${group}\tSM:${sample}\tPL:${pl}" -o ${bam_name}.bam ${bam} | samtools addreplacerg -r "@RG\tID:${group}\tSM:${sample}\tPL:${pl}" -o ${bam_name}.bam ${bam} | ||||
| samtools index ${bam_name}.bam ${bam_name}.bam.bai | |||||
| samtools index ${bam_name}.bam | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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