променени са 1 файла, в които са добавени 4 реда и са изтрити 4 реда
+ 4
- 4
workflow.wdl
Целия файл
| @@ -302,10 +302,10 @@ workflow {{ project_name }} { | |||
| call somatic.somatic as somatic { | |||
| input: | |||
| sample=sample_id, | |||
| tumor_bam=tumor_BQSR.recaled_bam, | |||
| tumor_bam_index=tumor_BQSR.recaled_bam_index, | |||
| normal_bam=normal_BQSR.recaled_bam, | |||
| normal_bam_index=normal_BQSR.recaled_bam_index, | |||
| tumor_bam=tumor_Dedup.deduped_bam, | |||
| tumor_bam_index=tumor_Dedup.deduped_bam_index, | |||
| normal_bam=normal_Dedup.deduped_bam, | |||
| normal_bam_index=normal_Dedup.deduped_bam_index, | |||
| ref_dir=ref_dir, | |||
| fasta=fasta, | |||
| docker=varscan_docker, | |||
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