Update: VEP ncbi_build

tasks/VEP.wdl

@@ -25,9 +25,9 @@ task VEP {
     awk -F'\t' '{if(($1~"^#")||($1!~"^#" && $7=="PASS")){print $0}}' ${vcf} > ${basename}.PASS.vcf
     
     # Define ncbi_build
-    if [ hg == "hg19" ]; then
+    if [ ${hg} == "hg19" ]; then
       ncbi_build="GRCh37"
-    elif [ hg == "hg38" ]; then
+    elif [ ${hg} == "hg38" ]; then
       ncbi_build="GRCh38"
     
     ncol=`awk -F'\t' '{if($1!~"^#"){print NF}}' ${basename}.PASS.vcf | uniq`