Fix bug: BQSR.wdl

tasks/BQSR.wdl

@@ -24,7 +24,13 @@ task BQSR {
 
     ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt \
     -r ${ref_dir}/${fasta} -i ${realigned_bam} \
-    -q ${sample}_recal_data.table --algo QualCal \
+    --algo QualCal \
+    -k ${dbsnp_dir}/${dbsnp} -k ${dbmills_dir}/${db_mills} \
+    ${sample}_recal_data.table
+
+    ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt \
+    -r ${ref_dir}/${fasta} -i ${realigned_bam} -q ${sample}_recal_data.table \
+    --algo QualCal \
     -k ${dbsnp_dir}/${dbsnp} -k ${dbmills_dir}/${db_mills} \
     ${sample}_recal_data.table.post \
     --algo ReadWriter ${sample}.sorted.deduped.realigned.recaled.bam