1 gewijzigde bestanden met toevoegingen van 4 en 4 verwijderingen
+ 4
- 4
workflow.wdl
Bestand weergeven
| call somatic.somatic as somatic_fb { | call somatic.somatic as somatic_fb { | ||||
| input: | input: | ||||
| sample=sample_id, | sample=sample_id, | ||||
| normal_recaled_bam=normal_replaceRG.deduped_bam, | |||||
| normal_recaled_bam_index=normal_replaceRG.deduped_bam_index, | |||||
| tumor_recaled_bam=tumor_replaceRG.deduped_bam, | |||||
| tumor_recaled_bam_index=tumor_replaceRG.deduped_bam_index, | |||||
| normal_bam=normal_replaceRG.deduped_bam, | |||||
| normal_bam_index=normal_replaceRG.deduped_bam_index, | |||||
| tumor_bam=tumor_replaceRG.deduped_bam, | |||||
| tumor_bam_index=tumor_replaceRG.deduped_bam_index, | |||||
| ref_dir=ref_dir, | ref_dir=ref_dir, | ||||
| fasta=fasta, | fasta=fasta, | ||||
| docker=varscan_docker, | docker=varscan_docker, |
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