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workflow.wdl
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| @@ -625,10 +625,10 @@ workflow {{ project_name }} { | |||
| call somatic.somatic as somatic_fb { | |||
| input: | |||
| sample=sample_id, | |||
| normal_recaled_bam=normal_replaceRG.deduped_bam, | |||
| normal_recaled_bam_index=normal_replaceRG.deduped_bam_index, | |||
| tumor_recaled_bam=tumor_replaceRG.deduped_bam, | |||
| tumor_recaled_bam_index=tumor_replaceRG.deduped_bam_index, | |||
| normal_bam=normal_replaceRG.deduped_bam, | |||
| normal_bam_index=normal_replaceRG.deduped_bam_index, | |||
| tumor_bam=tumor_replaceRG.deduped_bam, | |||
| tumor_bam_index=tumor_replaceRG.deduped_bam_index, | |||
| ref_dir=ref_dir, | |||
| fasta=fasta, | |||
| docker=varscan_docker, | |||
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