Fixbug: TNseq output

tasks/TNseq.wdl

@@ -82,10 +82,10 @@ task TNseq {
   }
 
   output {
-    File TNseq_filter_vcf = "${sample}.TNseq.$typ.filter.vcf"
-    File TNseq_filter_vcf_index = "${sample}.TNseq.$typ.filter.vcf.idx"
-    File TNseq_vcf = "${sample}.TNseq.$typ.vcf"
-    File TNseq_vcf_index = "${sample}.TNseq.$typ.vcf.idx"
+    File TNseq_filter_vcf = "${sample}.TNseq.${typ}.filter.vcf"
+    File TNseq_filter_vcf_index = "${sample}.TNseq.${typ}.filter.vcf.idx"
+    File TNseq_vcf = "${sample}.TNseq.${typ}.vcf"
+    File TNseq_vcf_index = "${sample}.TNseq.${typ}.vcf.idx"
     File contamination = "${sample}.contamination"
     File contamination_segments = "${sample}.contamination.segments"
     File orientation = "${sample}.orientation"