Fixbug: input_fastq and input_bam

inputs

   "{{ project_name }}.varscan": {{ varscan | tojson }},
   "{{ project_name }}.annovar": {{ annovar | tojson }},
   "{{ project_name }}.only_pass": {{ only_pass | tojson }},
-  "{{ project_name }}.vep": {{ vep | tojson }}
+  "{{ project_name }}.vep": {{ vep | tojson }},
+  "{{ project_name }}.input_fastq": {{ input_fastq | tojson }},
+  "{{ project_name }}.input_bam": {{ input_bam | tojson }}
 }