共有 2 個檔案被更改，包括 3 行新增 和 3 行删除
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README.md
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| @@ -2,7 +2,7 @@ | |||
| This APP developed for somatic short variant discovery (SNVs + Indels). | |||
| ***Supported callers*** | |||
| * TNhaplotyper2 | |||
| * TNseq (TNhaplotyper2) | |||
| * TNscope | |||
| * VarScan | |||
| * TNhaplotyper (This caller is only available in `v0.1.0` as it is too outdated) | |||
| @@ -16,7 +16,7 @@ Variant caller can be selected by setting `ture/false` in the submitted sample.c | |||
| The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). | |||
| ### New Releases | |||
| * The TNhaplotyper, also named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. | |||
| * The TNhaplotyper, named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2. | |||
| * The `corealigner` step has been removed. | |||
| * The `vcf2maf` step has been removed. Thus, the final output is the annotated `VCF`. | |||
tasks/TNhaplotyper2.wdl → tasks/TNseq.wdl
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| task TNhaplotyper2 { | |||
| task TNseq { | |||
| File ref_dir | |||
| File dbsnp_dir | |||
| String sample | |||
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