} | } | ||||
output { | output { | ||||
File TNseq_filter_vcf=${sample}.TNseq.$typ.filter.vcf | |||||
File TNseq_filter_vcf='${sample}.TNseq.$typ.filter.vcf' | |||||
File TNseq_filter_vcf_index = "${sample}.TNseq.$typ.filter.vcf.idx" | File TNseq_filter_vcf_index = "${sample}.TNseq.$typ.filter.vcf.idx" | ||||
File TNseq_vcf = "${sample}.TNseq.$typ.vcf" | File TNseq_vcf = "${sample}.TNseq.$typ.vcf" | ||||
File TNseq_vcf_index = "${sample}.TNseq.$typ.vcf.idx" | File TNseq_vcf_index = "${sample}.TNseq.$typ.vcf.idx" |