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Update: README.md

tags/v0.1.2
YaqingLiu hace 4 años
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@@ -25,22 +25,22 @@ We recommend using choppy system and Aliyun OSS service. The command will look l

```Shell
# Activate the choppy environment
open-choppy-env
$open-choppy-env

# Install the APP
choppy install YaqingLiu/variant-calling-latest [-f]
$choppy install YaqingLiu/variant-calling-latest [-f]

# List the parameters
choppy samples YaqingLiu/variant-calling-latest [--no-default]
$choppy samples YaqingLiu/variant-calling-latest [--no-default]

# Submit you task with the `samples.csv file` and `project name`
choppy batch YaqingLiu/variant-calling-latest samples.csv -p Project [-l project:Label]
$choppy batch YaqingLiu/variant-calling-latest samples.csv -p Project [-l project:Label]

# Query the status of all tasks in the project
choppy query -L Label | grep "status"
$choppy query -L Label | grep "status"
```

**Please note**: The `defaults` can be forcibly replaced by the settings in `samples.csv`. Therefore, there is no need to contact me over this issue.
**Please note:** The `defaults` can be forcibly replaced by the settings in `samples.csv`. Therefore, there is no need to contact me over this issue.

The parameters that must need contains: sample_id,normal_fastq_1,normal_fastq_2,tumor_fastq_1,tumor_fastq_2


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