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workflow.wdl
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| @@ -5,14 +5,12 @@ import "./tasks/deduped_Metrics.wdl" as deduped_Metrics | |||
| import "./tasks/Realigner.wdl" as Realigner | |||
| import "./tasks/BQSR.wdl" as BQSR | |||
| import "./tasks/Haplotyper.wdl" as Haplotyper | |||
| import "./tasks/corealigner.wdl" as corealigner | |||
| import "./tasks/TNseq.wdl" as TNseq | |||
| import "./tasks/TNscope.wdl" as TNscope | |||
| import "./tasks/somatic.wdl" as somatic | |||
| import "./tasks/processSomatic.wdl" as processSomatic | |||
| import "./tasks/somaticFilter.wdl" as somaticFilter | |||
| import "./tasks/annovar.wdl" as annovar | |||
| import "./tasks/vcf2maf.wdl" as vcf2maf | |||
| workflow {{ project_name }} { | |||
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