ti_tv

tasks/region.wdl

@@ -65,13 +65,13 @@ task region {
 
 		for i in *vcfstat.txt
 		do
-			cat $i | sed -n '13,13p' | sed 's/\s\+/\t/g' | cut -f3 >> ${sample_name}.${tag}.ti_tv.txt
+			cat $i | sed -n '10,10p' | sed 's/\s\+/\t/g' | cut -f3 >> ${sample_name}.${tag}.ti_tv.txt
 		done
 
 
 		for i in *vcfstat.txt
 		do
-			cat $i | sed -n '14,14p' | sed 's/\s\+/\t/g' | cut -f5 >> ${sample_name}.${tag}.het_hom.txt
+			cat $i | sed -n '11,11p' | sed 's/\s\+/\t/g' | cut -f5 >> ${sample_name}.${tag}.het_hom.txt
 		done