LUYAO REN
преди 5 години
променени са 1 файла, в които са добавени 2 реда и са изтрити 2 реда
+ 2
- 2
tasks/benchmark.wdl
Целия файл
| @@ -27,9 +27,9 @@ task benchmark { | |||
| elif [ ${sample_mark} == "LCL6" ]; then | |||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL6.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL6.bed.gz --threads $nt -o ${sample} | |||
| elif [ ${sample_mark} == "LCL7" ]; then | |||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL7.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL6.bed.gz --threads $nt -o ${sample} | |||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL7.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL7.bed.gz --threads $nt -o ${sample} | |||
| elif [ ${sample_mark} == "LCL8" ]; then | |||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL8.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL6.bed.gz --threads $nt -o ${sample} | |||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL8.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL8.bed.gz --threads $nt -o ${sample} | |||
| else | |||
| echo "only for quartet samples" | |||
| fi | |||
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