LUYAO REN
5 роки тому
1 змінених файлів з 2 додано та 2 видалено
+ 2
- 2
tasks/benchmark.wdl
Переглянути файл
| elif [ ${sample_mark} == "LCL6" ]; then | elif [ ${sample_mark} == "LCL6" ]; then | ||||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL6.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL6.bed.gz --threads $nt -o ${sample} | /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL6.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL6.bed.gz --threads $nt -o ${sample} | ||||
| elif [ ${sample_mark} == "LCL7" ]; then | elif [ ${sample_mark} == "LCL7" ]; then | ||||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL7.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL6.bed.gz --threads $nt -o ${sample} | |||||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL7.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL7.bed.gz --threads $nt -o ${sample} | |||||
| elif [ ${sample_mark} == "LCL8" ]; then | elif [ ${sample_mark} == "LCL8" ]; then | ||||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL8.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL6.bed.gz --threads $nt -o ${sample} | |||||
| /opt/hap.py/bin/hap.py ${benchmarking_dir}/LCL8.vcf.gz ${sample}.rtg.vcf.gz -f ${benchmarking_dir}/LCL8.bed.gz --threads $nt -o ${sample} | |||||
| else | else | ||||
| echo "only for quartet samples" | echo "only for quartet samples" | ||||
| fi | fi |
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