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tasks/merge_family.wdl
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| @@ -22,7 +22,7 @@ | |||
| /opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfannotate --relabel=${rename} -i ${LCL8_vcf_gz} -o LCL8.vcf.gz | |||
| /opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfmerge --force-merge-all -o ${project}.family.vcf.gz LCL5_vcf_gz LCL6_vcf_gz LCL7_vcf_gz LCL8_vcf_gz | |||
| /opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfmerge --force-merge-all -o ${project}.family.vcf.gz LCL5.vcf.gz LCL6.vcf.gz LCL7.vcf.gz LCL8.vcf.gz | |||
| gunzip ${project}.family.vcf.gz | |||
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