LUYAO REN
vor 5 Jahren
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tasks/merge_mendelian_vote.wdl
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| python /opt/merge_mendelian_vote.py ${mendelian_file} ${vote_file} ${mut_file} ${output_prefix}.mendelian.vote.txt | python /opt/merge_mendelian_vote.py ${mendelian_file} ${vote_file} ${mut_file} ${output_prefix}.mendelian.vote.txt | ||||
| ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) < 51) || (length($7) < 51)) { print } }' > ${output_prefix}.snv | |||||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) < 51) || (length($7) < 51)) { print } }' > ${output_prefix}.snv | |||||
| ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) > 50) || (length($7) > 50)) { print } }' > ${output_prefix}.indel | |||||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) > 50) || (length($7) > 50)) { print } }' > ${output_prefix}.indel | |||||
| >>> | >>> | ||||
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