LUYAO REN
5 år sedan
1 ändrade filer med 2 tillägg och 2 borttagningar
+ 2
- 2
tasks/merge_mendelian_vote.wdl
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| @@ -11,9 +11,9 @@ task merge_mendelian_vote { | |||
| python /opt/merge_mendelian_vote.py ${mendelian_file} ${vote_file} ${mut_file} ${output_prefix}.mendelian.vote.txt | |||
| ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) < 51) || (length($7) < 51)) { print } }' > ${output_prefix}.snv | |||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) < 51) || (length($7) < 51)) { print } }' > ${output_prefix}.snv | |||
| ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) > 50) || (length($7) > 50)) { print } }' > ${output_prefix}.indel | |||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) > 50) || (length($7) > 50)) { print } }' > ${output_prefix}.indel | |||
| >>> | |||
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