LUYAO REN
5 anni fa
1 ha cambiato i file con 2 aggiunte e 2 eliminazioni
+ 2
- 2
tasks/merge_mendelian_vote.wdl
Vedi File
| @@ -11,9 +11,9 @@ task merge_mendelian_vote { | |||
| python /opt/merge_mendelian_vote.py ${mendelian_file} ${vote_file} ${mut_file} ${output_prefix}.mendelian.vote.txt | |||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) < 51) || (length($7) < 51)) { print } }' > ${output_prefix}.snv | |||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) == 1) || (length($7) == 1)) { print } }' > ${output_prefix}.snv | |||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) > 50) || (length($7) > 50)) { print } }' > ${output_prefix}.indel | |||
| cat ${output_prefix}.mendelian.vote.txt | awk '{ if ((length($6) > 1) || (length($7) > 1)) { print } }' > ${output_prefix}.indel | |||
| >>> | |||
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