LUYAO REN
5 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/mendelian.wdl
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| @@ -27,7 +27,7 @@ task mendelian { | |||
| zcat ${family_name}.family.anno.mendelian.vcf.gz | grep '#' > header | |||
| zcat ${family_name}.family.anno.mendelian.vcf.gz | grep -v '#'| grep 'MCU\|MCV' | cat header - > ${family_name}.violation.vcf | |||
| zcat ${family_name}.family.anno.mendelian.vcf.gz | grep -v '#'| grep -v 'MCV' | grep -v 'MCU' > ${family_name}.consistent.vcf | |||
| zcat ${family_name}.family.anno.mendelian.vcf.gz | grep -v '#'| grep -v 'MCV' | grep -v 'MCU' | cat header - > ${family_name}.consistent.vcf | |||
| rtg bgzip ${family_name}.violation.vcf | |||
| rtg index -f vcf ${family_name}.violation.vcf.gz | |||
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