cluster config

inputs

@@ -7,7 +7,7 @@
   "{{ project_name }}.zipIndex.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",
   "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",
   "{{ project_name }}.LCL6variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",
-  "{{ project_name }}.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",
+  "{{ project_name }}.cluster_config": "OnDemand bcs.a2.xlarge img-ubuntu-vpc",
   "{{ project_name }}.LCL7variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",
   "{{ project_name }}.LCL5variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",
   "{{ project_name }}.LCL8variantsNorm.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/bcftools:v1.9",

tasks/mendelian.wdl

@@ -25,7 +25,7 @@ task mendelian {
 		cat VBT/${family_name}_trio.vcf | grep -v '#' | cut -f1-9,11 | grep 'MD=1' | grep -v '0/0' | cat father_header - > ${LCL7_name}.sister.mendelian.gt.vcf
 
 		cat VBT/${family_name}_trio.vcf | grep '#' | cut -f1-9,12 > twin_header
-		cat VBT/${family_name}_trio.vcf | grep -v '#' | cut -f1-9,12 | grep 'MD=1' | grep -v '0/0' | cat header - > ${family_name}.twins.sister.mendelian.gt.vcf
+		cat VBT/${family_name}_trio.vcf | grep -v '#' | cut -f1-9,12 | grep 'MD=1' | grep -v '0/0' | cat twin_header - > ${family_name}.twins.sister.mendelian.gt.vcf
 
 	>>>