LUYAO REN
5 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/gvcf_homo_ref.wdl
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| @@ -11,7 +11,7 @@ task gvcf_homo_ref { | |||
| awk '{ if ($5 == "<NON_REF>") { print } }' ${gvcf} | sed s'/:/\t/'g | awk '{ if($16 >= 30) { print }}' | cut -f1,2,8 | sed s'/END=//g' > ${sample}.filtered.bed | |||
| bedtools merged -i ${sample}.filtered.bed > ${sample}.homo_ref.bed | |||
| /opt/ccdg/bedtools-2.27.1/bin/bedtools merged -i ${sample}.filtered.bed > ${sample}.homo_ref.bed | |||
| >>> | |||
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