immune txt

inputs

@@ -1,9 +1,9 @@
 {
   "{{ project_name }}.sample": "{{ sample }}",
+  "{{ project_name }}.immune_txt": "oss://chinese-quartet/quartet-storage-data/reference_data/immune-related-genes.txt",
   "{{ project_name }}.disk_size": "150",
   "{{ project_name }}.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
   "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
   "{{ project_name }}.database": "oss://chinese-quartet/quartet-storage-data/reference_data/annovar_hg38/",
   "{{ project_name }}.vcf_file": "{{ vcf }}"
 }
-

workflow.wdl

@@ -3,6 +3,7 @@ import "./tasks/annovar.wdl" as annovar
 workflow {{ project_name }} { 
 	File vcf_file
 	File database
+	File immune_txt
 	String sample
 	String docker
 	String cluster_config
@@ -12,6 +13,7 @@ workflow {{ project_name }} {
 		input: 
 		vcf_file=vcf_file,
 		database=database,
+		immune_txt=immune_txt,
 		sample=sample,
 		docker=docker,
 		cluster_config=cluster_config,