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immune txt

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LUYAO REN 5 年之前
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共有 2 個文件被更改,包括 3 次插入1 次删除
  1. +1
    -1
      inputs
  2. +2
    -0
      workflow.wdl

+ 1
- 1
inputs 查看文件

{ {
"{{ project_name }}.sample": "{{ sample }}", "{{ project_name }}.sample": "{{ sample }}",
"{{ project_name }}.immune_txt": "oss://chinese-quartet/quartet-storage-data/reference_data/immune-related-genes.txt",
"{{ project_name }}.disk_size": "150", "{{ project_name }}.disk_size": "150",
"{{ project_name }}.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc", "{{ project_name }}.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
"{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04", "{{ project_name }}.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/annovar:v2018.04",
"{{ project_name }}.database": "oss://chinese-quartet/quartet-storage-data/reference_data/annovar_hg38/", "{{ project_name }}.database": "oss://chinese-quartet/quartet-storage-data/reference_data/annovar_hg38/",
"{{ project_name }}.vcf_file": "{{ vcf }}" "{{ project_name }}.vcf_file": "{{ vcf }}"
} }


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workflow.wdl 查看文件

workflow {{ project_name }} { workflow {{ project_name }} {
File vcf_file File vcf_file
File database File database
File immune_txt
String sample String sample
String docker String docker
String cluster_config String cluster_config
input: input:
vcf_file=vcf_file, vcf_file=vcf_file,
database=database, database=database,
immune_txt=immune_txt,
sample=sample, sample=sample,
docker=docker, docker=docker,
cluster_config=cluster_config, cluster_config=cluster_config,

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