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LUYAO REN 5 年前
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7b8d7a79e9
共有 1 个文件被更改,包括 2 次插入2 次删除
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    -2
      tasks/MIEpos2bed.wdl

+ 2
- 2
tasks/MIEpos2bed.wdl 查看文件

@@ -10,9 +10,9 @@ task MIEpos2bed {

python /opt/vcf2bed.py ${mie_file} ${sample_name}.${chromo}.info.txt

cat ${mie_file} | awk '{ if ($3 == 0) { print } }' | cut -f1,8,9 > ${sample_name}.${chromo}.allvariants.bed
cat ${sample_name}.${chromo}.info.txt | grep -v '0:4:4' | grep -v '1:4:4' | awk '{ if ($3 != 0) { print } }' | cut -f1,8,9 > ${sample_name}.${chromo}.allvariants.bed

cat ${mie_file} | awk '{ if ($3 == 0) { print } }' | grep 'MIE' | cut -f1,8,9 > ${sample_name}.${chromo}.mie.bed
cat ${sample_name}.${chromo}.info.txt | grep -v '0:4:4' | grep -v '1:4:4' | awk '{ if ($3 != 0) { print } }' | grep 'MIE' | cut -f1,8,9 > ${sample_name}.${chromo}.mie.bed

>>>


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