LUYAO REN
pirms 5 gadiem
1 mainītis faili ar 2 papildinājumiem un 2 dzēšanām
+ 2
- 2
tasks/MIEpos2bed.wdl
Parādīt failu
| python /opt/vcf2bed.py ${mie_file} ${sample_name}.${chromo}.info.txt | python /opt/vcf2bed.py ${mie_file} ${sample_name}.${chromo}.info.txt | ||||
| cat ${mie_file} | awk '{ if ($3 == 0) { print } }' | cut -f1,8,9 > ${sample_name}.${chromo}.allvariants.bed | |||||
| cat ${sample_name}.${chromo}.info.txt | grep -v '0:4:4' | grep -v '1:4:4' | awk '{ if ($3 != 0) { print } }' | cut -f1,8,9 > ${sample_name}.${chromo}.allvariants.bed | |||||
| cat ${mie_file} | awk '{ if ($3 == 0) { print } }' | grep 'MIE' | cut -f1,8,9 > ${sample_name}.${chromo}.mie.bed | |||||
| cat ${sample_name}.${chromo}.info.txt | grep -v '0:4:4' | grep -v '1:4:4' | awk '{ if ($3 != 0) { print } }' | grep 'MIE' | cut -f1,8,9 > ${sample_name}.${chromo}.mie.bed | |||||
| >>> | >>> | ||||
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