running time · 7ce9c17494 - Choppy for Reproducible Omics Pipeline

running time

master

LUYAO REN 6 年之前

父節點

0166b23d3f

當前提交

7ce9c17494

共有 1 個檔案被更改，包括 1 行新增 和 1 行删除

統一視圖

							
								+ 1
								
								- 1
							
README.md查看文件
								
															  --algo RNASplitReadsAtJunction --reassign_mapq 255:60 SPLIT_BAM
															
															  --algo RNASplitReadsAtJunction --reassign_mapq 255:60 SPLIT_BAM
														
															```
															
															```
														
															**(5) Base quality score recalibration **
															
															**(5) Base quality score recalibration**
														
															```bash
															
															```bash
														
															sentieon driver -r $fasta -t $nt -i SPLIT_BAM --algo QualCal -k $dbsnp -k $known_Mills_indels -k $known_1000G_indels recal_data.table
															
															sentieon driver -r $fasta -t $nt -i SPLIT_BAM --algo QualCal -k $dbsnp -k $known_Mills_indels -k $known_1000G_indels recal_data.table