@@ -71,7 +71,7 @@ sentieon driver -t NUMBER_THREADS -r REFERENCE -i DEDUPED_BAM \ | |||
--algo RNASplitReadsAtJunction --reassign_mapq 255:60 SPLIT_BAM | |||
``` | |||
**(5) Base quality score recalibration ** | |||
**(5) Base quality score recalibration** | |||
```bash | |||
sentieon driver -r $fasta -t $nt -i SPLIT_BAM --algo QualCal -k $dbsnp -k $known_Mills_indels -k $known_1000G_indels recal_data.table |