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{ |
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{ |
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"{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics", |
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"{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics", |
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"{{ project_name }}.fasta": "GRCh38.d1.vd1.fa", |
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"{{ project_name }}.fasta": "GRCh38.d1.vd1.fa", |
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"{{ project_name }}.PIdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/picard", |
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"{{ project_name }}.PIdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/picard:2.18.2", |
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"{{ project_name }}.platform": "ILLUMINA", |
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"{{ project_name }}.platform": "ILLUMINA", |
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"{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ project_name }}.disk_size": "{{ disk_size }}", |
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"{{ project_name }}.disk_size": "{{ disk_size }}", |
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"{{ project_name }}.SAdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star", |
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"{{ project_name }}.SAdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star:2.7.0", |
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"{{ project_name }}.fastq_1": "{{ read1 }}", |
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"{{ project_name }}.fastq_1": "{{ read1 }}", |
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"{{ project_name }}.machine": "{{ machine }}", |
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"{{ project_name }}.machine": "{{ machine }}", |
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"{{ project_name }}.STdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }}.STdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01", |
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"{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/", |
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"{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc' }}", |
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"{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc' }}", |
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"{{ project_name }}.SAref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/STAR_GRCh38/", |
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"{{ project_name }}.SAref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/STAR_GRCh38/", |
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"{{ project_name }}.SAMdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools", |
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"{{ project_name }}.SAMdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1", |
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"{{ project_name }}.STref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/", |
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"{{ project_name }}.STref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/", |
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"{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf", |
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"{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf", |
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"{{ project_name }}.sample": "{{ sample }}", |
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"{{ project_name }}.sample": "{{ sample }}", |