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fix input

master
LUYAO REN 6 jaren geleden
bovenliggende
commit
4268ba27e8
1 gewijzigde bestanden met toevoegingen van 3 en 3 verwijderingen
  1. +3
    -3
      inputs

+ 3
- 3
inputs Bestand weergeven

@@ -1,11 +1,11 @@
{
"{{ project_name }}.SENTIEON_INSTALL_DIR": "/opt/sentieon-genomics",
"{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
"{{ project_name }}.PIdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/picard",
"{{ project_name }}.PIdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/picard:2.18.2",
"{{ project_name }}.platform": "ILLUMINA",
"{{ project_name }}.dbsnp_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
"{{ project_name }}.disk_size": "{{ disk_size }}",
"{{ project_name }}.SAdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star",
"{{ project_name }}.SAdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/star:2.7.0",
"{{ project_name }}.fastq_1": "{{ read1 }}",
"{{ project_name }}.machine": "{{ machine }}",
"{{ project_name }}.STdocker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/sentieon-genomics:v2018.08.01",
@@ -14,7 +14,7 @@
"{{ project_name }}.dbmills_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/",
"{{ project_name }}.cluster_config": "{{ cluster if cluster != '' else 'OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc' }}",
"{{ project_name }}.SAref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/STAR_GRCh38/",
"{{ project_name }}.SAMdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools",
"{{ project_name }}.SAMdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
"{{ project_name }}.STref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/",
"{{ project_name }}.db_mills": "Mills_and_1000G_gold_standard.indels.hg38.vcf",
"{{ project_name }}.sample": "{{ sample }}",

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