室间质评

LUYAO REN 4beee1ce96 rtg in vcfstat		5 年前
pictures	first commit	5 年前
tasks	rtg in vcfstat	5 年前
README.md	output of bamqc to multiqc	5 年前
Report.md	first commit	5 年前
fastq_screen.conf	first commit	5 年前
inputSamplesFileExamples.tsv	first commit	5 年前
inputs	output of bamqc to multiqc	5 年前
workflow.wdl	rtg in vcfstat	5 年前

中华家系1号标准物质室间质评报告系统分析流程

准备inputSamplesFIle (tsv格式)

#fastq_read1	#fastq_read2	#bam	#bai	#vcf	#sample_mark

(1) fastqc

(2) fastqscreen

(3) qualimap

(4) benchmarking (hap.py)

(5) multiqc

(6) VcfStats

注：可查询multiqc支持的指控模块，按需求添加 https://multiqc.info/docs/#multiqc-modules