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LUYAO REN
3d4fc9db41
output of bamqc to multiqc
|
5 年之前 | |
|---|---|---|
| pictures | 5 年之前 | |
| tasks | 5 年之前 | |
| README.md | 5 年之前 | |
| Report.md | 5 年之前 | |
| fastq_screen.conf | 5 年之前 | |
| inputSamplesFileExamples.tsv | 5 年之前 | |
| inputs | 5 年之前 | |
| workflow.wdl | 5 年之前 | |
README.md
中华家系1号标准物质室间质评报告系统分析流程
1. 中华家系1号标准物质介绍
2. 分析流程图
3. 各模块运行流程
准备inputSamplesFIle (tsv格式)
#fastq_read1 #fastq_read2 #bam #bai #vcf #sample_mark
(1) fastqc
(2) fastqscreen
(3) qualimap
(4) benchmarking (hap.py)
(5) multiqc
(6) VcfStats
注：可查询multiqc支持的指控模块，按需求添加 https://multiqc.info/docs/#multiqc-modules