readme

fastq_screen.conf

@@ -81,14 +81,14 @@ THREADS		32
 ## http://www.ncbi.nlm.nih.gov/VecScreen/UniVec.html
 #DATABASE	Vectors		/data/public/Genomes/Vectors/Vectors
 
-DATABASE	Human	/cromwell_inputs/*/fastq_screen_reference/genome
-DATABASE	Mouse	/cromwell_inputs/*/fastq_screen_reference/mouse
-DATABASE	ERCC	/cromwell_inputs/*/fastq_screen_reference/ERCC
-DATABASE	EColi	/cromwell_inputs/*/fastq_screen_reference/ecoli
-DATABASE	Adapter	/cromwell_inputs/*/fastq_screen_reference/adapters
-DATABASE	Vector	/cromwell_inputs/*/fastq_screen_reference/vector
-DATABASE	rRNA	/cromwell_inputs/*/fastq_screen_reference/rRNARef
-DATABASE	Virus	/cromwell_inputs/*/fastq_screen_reference/viral
-DATABASE	Yeast	/cromwell_inputs/*/fastq_screen_reference/GCF_000146045.2_R64_genomic_modify
-DATABASE	Mitoch	/cromwell_inputs/*/fastq_screen_reference/human_mitoch/Human_mitoch
-DATABASE	Phix	/cromwell_inputs/*/fastq_screen_reference/phix
+DATABASE	Human	/cromwell_root/tmp/fastq_screen_reference/genome
+DATABASE	Mouse	/cromwell_root/tmp/fastq_screen_reference/mouse
+DATABASE	ERCC	/cromwell_root/tmp/fastq_screen_reference/ERCC
+DATABASE	EColi	/cromwell_root/tmp/fastq_screen_reference/ecoli
+DATABASE	Adapter	/cromwell_root/tmp/fastq_screen_reference/adapters
+DATABASE	Vector	/cromwell_root/tmp/fastq_screen_reference/vector
+DATABASE	rRNA	/cromwell_root/tmp/fastq_screen_reference/rRNARef
+DATABASE	Virus	/cromwell_root/tmp/fastq_screen_reference/viral
+DATABASE	Yeast	/cromwell_root/tmp/fastq_screen_reference/GCF_000146045.2_R64_genomic_modify
+DATABASE	Mitoch	/cromwell_root/tmp/fastq_screen_reference/Human_mitoch
+DATABASE	Phix	/cromwell_root/tmp/fastq_screen_reference/phix