LUYAO REN
4 years ago
2 changed files with 2 additions and 2 deletions
+ 1
- 1
inputs
View File
| "{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.ps.g.6xlarge img-ubuntu-vpc", | "{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.ps.g.6xlarge img-ubuntu-vpc", | ||||
| "{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8", | "{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8", | ||||
| "{{ project_name }}.qualimapBAMqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", | "{{ project_name }}.qualimapBAMqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", | ||||
| "{{ project_name }}.qualimapBAMqc.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc", | |||||
| "{{ project_name }}.qualimapBAMqc.cluster_config": "OnDemand bcs.ps.g.8xlarge img-ubuntu-vpc", | |||||
| "{{ project_name }}.multiqc.disk_size": "100" | "{{ project_name }}.multiqc.disk_size": "100" | ||||
| } | } |
+ 1
- 1
tasks/qualimapBAMqc.wdl
View File
| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=60G | |||||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=120G | |||||
| tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | ||||
| >>> | >>> | ||||
Loading…