LUYAO REN
4 лет назад
2 измененных файлов: 2 добавлений и 2 удалений
+ 1
- 1
inputs
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| @@ -4,6 +4,6 @@ | |||
| "{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.ps.g.6xlarge img-ubuntu-vpc", | |||
| "{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8", | |||
| "{{ project_name }}.qualimapBAMqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0", | |||
| "{{ project_name }}.qualimapBAMqc.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc", | |||
| "{{ project_name }}.qualimapBAMqc.cluster_config": "OnDemand bcs.ps.g.8xlarge img-ubuntu-vpc", | |||
| "{{ project_name }}.multiqc.disk_size": "100" | |||
| } | |||
+ 1
- 1
tasks/qualimapBAMqc.wdl
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| @@ -10,7 +10,7 @@ task qualimapBAMqc { | |||
| set -o pipefail | |||
| set -e | |||
| nt=$(nproc) | |||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=60G | |||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=120G | |||
| tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | |||
| >>> | |||
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