tunning novoalign parameters · 0d7c6d3997 - Choppy for Reproducible Omics Pipeline

tunning novoalign parameters

master

LUYAO REN 6 years ago

parent

4fab4841b4

commit

0d7c6d3997

1 changed files with 1 additions and 1 deletions

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tasks/novoalign.wdlView File
								
																	set -o pipefail
															
																	set -o pipefail
														
																	set -e	
															
																	set -e	
														
																	nt=$(nproc)
															
																	nt=$(nproc)
														
																	/opt/novoalign -d ${NVref_dir}/${index} -f ${fastq_1} ${fastq_2} -o SAM --hlimit 9 ­-t 0,2 -c $nt > ${sample}.novoalign.sam
															
																	/opt/novoalign -d ${NVref_dir}/${index} -f ${fastq_1} ${fastq_2} -o SAM --hlimit 9 -t 0,2 -c $nt > ${sample}.novoalign.sam
														
																>>>
															
																>>>
														
																runtime {
															
																runtime {