LUYAO REN
6 years ago
1 changed files with 1 additions and 1 deletions
+ 1
- 1
tasks/novoalign.wdl
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| @@ -13,7 +13,7 @@ task novoalign { | |||
| set -o pipefail | |||
| set -e | |||
| nt=$(nproc) | |||
| /opt/novoalign -d ${NVref_dir}/${index} -f ${fastq_1} ${fastq_2} -o SAM --hlimit 9 -t 0,2 -c $nt > ${sample}.novoalign.sam | |||
| /opt/novoalign -d ${NVref_dir}/${index} -f ${fastq_1} ${fastq_2} -o SAM --hlimit 9 -t 0,2 -c $nt > ${sample}.novoalign.sam | |||
| >>> | |||
| runtime { | |||
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