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- task JI {
- String vcf_a
- String vcf_b
- String dir_name
- File sdf
- File bed
- File vcf_dir
- String docker
- String cluster_config
- String disk_size
-
- command <<<
- set -o pipefail
- set -e
-
- /opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfeval -b ${vcf_dir}/${vcf_a} -c ${vcf_dir}/${vcf_b} -o ${dir_name} -t ${sdf} --bed-regions=${bed}
-
- >>>
-
- runtime {
- docker:docker
- cluster: cluster_config
- systemDisk: "cloud_ssd 40"
- dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
- }
- output {
- File JI_summary = "${dir_name}/summary.txt"
- }
- }
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