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for loop

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LUYAO REN 4 年之前
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共有 1 個檔案被更改,包括 2 行新增5 行删除
  1. +2
    -5
      tasks/getBam.wdl

+ 2
- 5
tasks/getBam.wdl 查看文件

@@ -8,12 +8,9 @@ task getBam {
String disk_size
command <<<
cat ${region} | whlie read a
do
cat ${region} | whlie read a; do
/opt/conda/bin/samtools view -b ${bam} "$a" > $a.${sample}.bam
/opt/conda/bin/samtools index $a.${sample}.bam
done

/opt/conda/bin/samtools index $a.${sample}.bam; done
>>>

runtime {

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