LUYAO REN
3 lat temu
1 zmienionych plików z 2 dodań i 2 usunięć
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tasks/GVCFtyper.wdl
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| set -e | set -e | ||||
| export SENTIEON_LICENSE=192.168.0.55:8990 | export SENTIEON_LICENSE=192.168.0.55:8990 | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} --algo GVCFtyper ${project}.${chromo}joint.g.vcf ${sep=" " gvcfs} | |||||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} --algo GVCFtyper ${project}.${chromo}.joint.g.vcf ${sep=" " gvcfs} | |||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| } | } | ||||
| output { | output { | ||||
| File gvcf = "${project}.${chromo}joint.g.vcf" | |||||
| File gvcf = "${project}.${chromo}.joint.g.vcf" | |||||
| File gvcf_idx = "${project}.${chromo}.joint.g.vcf.idx" | File gvcf_idx = "${project}.${chromo}.joint.g.vcf.idx" | ||||
| } | } | ||||
| } | } |
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