LUYAO REN
3 years ago
1 changed files with 2 additions and 2 deletions
+ 2
- 2
tasks/GVCFtyper.wdl
View File
| @@ -16,7 +16,7 @@ command <<< | |||
| set -e | |||
| export SENTIEON_LICENSE=192.168.0.55:8990 | |||
| nt=$(nproc) | |||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} --algo GVCFtyper ${project}.${chromo}joint.g.vcf ${sep=" " gvcfs} | |||
| ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r ${ref_dir}/${fasta} --algo GVCFtyper ${project}.${chromo}.joint.g.vcf ${sep=" " gvcfs} | |||
| >>> | |||
| runtime { | |||
| @@ -27,7 +27,7 @@ command <<< | |||
| } | |||
| output { | |||
| File gvcf = "${project}.${chromo}joint.g.vcf" | |||
| File gvcf = "${project}.${chromo}.joint.g.vcf" | |||
| File gvcf_idx = "${project}.${chromo}.joint.g.vcf.idx" | |||
| } | |||
| } | |||
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