@@ -24,7 +24,7 @@ task CallableLoci { | |||
--minMappingQuality 20 \ | |||
--minDepth 10 \ | |||
--minDepthForLowMAPQ 10 \ | |||
--fix_misencoded_quality_scores \ | |||
--allow_potentially_misencoded_quality_scores \ | |||
-summary ${sample}_table.txt \ | |||
-o ${sample}_callable_status.bed | |||
>>> |