docker and new script

tasks/minfi.wdl

@@ -8,7 +8,7 @@ task minfi {
     command <<<
 		  set -o pipefail
 		  set -e	
-      Rscript /opt/EPIC.modified.R -p ${prefix} -i ${input_dir}
+      Rscript /opt/EPIC.raw.R -p ${prefix} -i ${input_dir}
     >>>
 
     runtime {
@@ -20,8 +20,6 @@ task minfi {
 
     output {
 		  File rdata = "${prefix}.RData"
-		  File filter_mVal = "${prefix}.filter.p.sex.snp.mVal.txt"
-		  File filter_bVal = "${prefix}.filter.p.sex.snp.bVal.txt"
       File raw_mVal = "${prefix}.raw.mVal.txt"
       File raw_bVal = "${prefix}.raw.bVal.txt"
     }