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docker and new script

master
LUYAO REN 5 年前
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3e8b29c297
共有 1 个文件被更改,包括 1 次插入3 次删除
  1. +1
    -3
      tasks/minfi.wdl

+ 1
- 3
tasks/minfi.wdl 查看文件

@@ -8,7 +8,7 @@ task minfi {
command <<<
set -o pipefail
set -e
Rscript /opt/EPIC.modified.R -p ${prefix} -i ${input_dir}
Rscript /opt/EPIC.raw.R -p ${prefix} -i ${input_dir}
>>>
runtime {
@@ -20,8 +20,6 @@ task minfi {
output {
File rdata = "${prefix}.RData"
File filter_mVal = "${prefix}.filter.p.sex.snp.mVal.txt"
File filter_bVal = "${prefix}.filter.p.sex.snp.bVal.txt"
File raw_mVal = "${prefix}.raw.mVal.txt"
File raw_bVal = "${prefix}.raw.bVal.txt"
}

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